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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60270860_60272742_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60270860 - 60272742
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTCTCCTTCAGT
Flanking Amino Acid:
YQESQQMKMKFQQLREQMEA
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
63.8
0.51
2.1
83.36
44

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372