Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60272884_60275244_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60272884 - 60275244

Intron Length:

2361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCACCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTTCCTTTGATT

Flanking Amino Acid:

AKEQCKQLSQELVAEKERNG

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

78.6

35.9

Major BPS

0.85

0.9

39.9

Major PPT

0.31

61.6

33.8

Minor 5ss

35.7

-1.6

3.4

48.7

47.5

Minor BPS

0.9

1.1

88.36

29.9

Associated Gene:

Gene:

KTN1

Ensembl Gene ID:

ENSAPLG00000012978

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022970

60232245 - 60284616

52372

ENSAPLT00000013663

60232245 - 60284616

52372

ENSAPLT00000044875

60232245 - 60284616

52372

ENSAPLT00000037403

60232245 - 60284616

52372

ENSAPLT00000032188

60232245 - 60284616

52372