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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60282532_60284061_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
60282532 - 60284061
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACCTTAC
5'SS Class:
weak_major
3'SS Sequence:
TTGTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTGTCTCAATT
Flanking Amino Acid:
PGQKKQKNGMDDQDSKTDSV
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
60.4
41.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.8
0.72
0.9
76
38
Minor 5ss
44.5
-0.6
2.9
52.1
45.1
Minor BPS
61.7
0.44
1.6
77.99
38.9

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372