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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60315823_60318820_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60315823 - 60318820
Intron Length:
2998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGC
5'SS Class:
major
3'SS Sequence:
TTCTCCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
ERYLEHCSGQDDLSASPQLF
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
56.9
42.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
70.9
0.47
1
68.7
36.2
Minor 5ss
28.6
-2.5
3.6
41.7
45
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
TBPL2
Ensembl Gene ID:
ENSAPLG00000006951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007215
60315772 - 60325095
9324