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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60319228_60320301_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60319228 - 60320301
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTTGTAATA
Flanking Amino Acid:
SESSGIVPQLQNIVSTVNLA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.8
0.56
0.8
73.4
31.2
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
50.3
0.01
2
62.57
38.8

Associated Gene:

Gene:
TBPL2
Ensembl Gene ID:
ENSAPLG00000006951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007215
60315772 - 60325095
9324