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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60321139_60321977_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60321139 - 60321977
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
GCTCTTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
CTCAGCACAGCT
Flanking Amino Acid:
SGKMVCTGAKSEEQSRLAAR
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
76
0.59
0.8
73.2
31.8
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
37.3
-0.8
2.2
53.74
47.1

Associated Gene:

Gene:
TBPL2
Ensembl Gene ID:
ENSAPLG00000006951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007215
60315772 - 60325095
9324