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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60339433_60340483_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60339433 - 60340483
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTCTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAC
U12 Branch Point Sequence:
GGTCTTCCAACA
Flanking Amino Acid:
DVNLPKKLCNSEFCGENLSK
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
52.6
0.07
1.1
60.7
37.6
Major PPT
68.5
0.42
1
62.6
38.6
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
45
-0.3
1.8
55.32
36.9

Associated Gene:

Gene:
ATG14
Ensembl Gene ID:
ENSAPLG00000006865
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007137
60327652 - 60343948
16297