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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60340775_60342641_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60340775 - 60342641
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCCCTGTTCACA
Flanking Amino Acid:
LVSPDTENLGRSGPFEISAD
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
76.5
0.6
0.8
70.7
33.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
43.9
-0.4
2.3
55.35
44.1

Associated Gene:

Gene:
ATG14
Ensembl Gene ID:
ENSAPLG00000006865
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007137
60327652 - 60343948
16297