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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60357931_60360359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
60357931 - 60360359
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
GTCTCCTTGTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
88.9
0.87
0.6
87.2
23.2
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
46.6
-0.1
3.5
75.43
41.9

Associated Gene:

Gene:
FBXO34
Ensembl Gene ID:
ENSAPLG00000026413
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027214
60348530 - 60370848
22319