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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60395122_60396818_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60395122 - 60396818
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTTGTCTC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GCTTCATAAAAT
Flanking Amino Acid:
VIPTTSKPPTVRANGHSVRP
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
61.3
43.3
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
41.7
-0.9
2.7
55.6
41.7
Minor BPS
49.9
0.07
2
71.29
45

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901