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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60396907_60398539_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60396907 - 60398539
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTCTGGAATT
Flanking Amino Acid:
STDKMAEKGKVLQTAVQTAP
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
0.9
73.5
41
Minor 5ss
31.4
-2.1
3.1
39
46.4
Minor BPS
49
0.01
2.1
70.57
41.2

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901