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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60399823_60401489_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60399823 - 60401489
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ACTTCGTTTATT
Flanking Amino Acid:
KVTVKPGVVEVIPSENKENE
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.4
0.77
0.9
80.7
36.7
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
50.9
0.11
2.3
73.77
43.4

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901