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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60402320_60402402_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60402320 - 60402402
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGT
5'SS Class:
major
3'SS Sequence:
TAACATTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGCCTTTAACA
Flanking Amino Acid:
QITTSLKGEQARDSDEKTSI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
69
41.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77
0.61
0.9
73.5
41
Minor 5ss
33.5
-1.9
3.3
49.6
46.3
Minor BPS
71.8
0.68
1.2
73.61
38

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901