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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60402986_60403529_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60402986 - 60403529
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TTTTCTGTTACC
Flanking Amino Acid:
GKLELDIPEDAKDLIRTTVG
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
69.9
0.45
1
68
37.8
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
57
0.2
2.3
78.32
37.8

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901