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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60405834_60407020_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60405834 - 60407020
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GAGACCTTGACT
Flanking Amino Acid:
LDVPSKEIVKKKTVPNGVSK
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
81.8
0.71
0.8
78.5
33.5
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
67.2
0.62
1.3
73.96
42.5

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901