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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60412150_60413221_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60412150 - 60413221
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
ATTTCTCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GCTTACTTCACA
Flanking Amino Acid:
ISVDRSPFDTPMLDGELLFT
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
42.1
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.7
0.73
0.8
77.6
30.4
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
57.2
0.22
2
69.03
43.1

Associated Gene:

Gene:
DLGAP5
Ensembl Gene ID:
ENSAPLG00000006300
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006555
60393444 - 60413344
19901