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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60489995_60490186_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60489995 - 60490186
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
AAGTGTGTAACT
Flanking Amino Acid:
MKLFALSCKLEREFR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
71.9
39.6
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
91
0.92
0.6
89
20
Minor 5ss
37.9
-1.4
2.7
48.5
40.3
Minor BPS
47
-0.1
2.3
66.88
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022237
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032314
60489980 - 60498267
8288