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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60490405_60492143_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60490405 - 60492143
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAC
5'SS Class:
major
3'SS Sequence:
TCCATCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATGAATT
Flanking Amino Acid:
EEDFRNHRNASYSNLAAERR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
66
40.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73
0.52
0.8
70.1
30.7
Minor 5ss
37.8
-1.4
3.1
50.8
45.8
Minor BPS
49.2
0.02
2.1
73.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022237
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032314
60489980 - 60498267
8288