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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60492275_60493695_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60492275 - 60493695
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGCACTTACAT
Flanking Amino Acid:
AEETPEVHKQRPNPFSKGVT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
70.6
35.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.8
0.45
1
70.5
34
Minor 5ss
34.1
-1.8
2.9
37
41.1
Minor BPS
49.8
0.07
1.9
71.94
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022237
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032314
60489980 - 60498267
8288