About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60493753_60494613_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60493753 - 60494613
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTATTCAATA
Flanking Amino Acid:
TSAEVTTSKPAVIASSSQGR
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.4
0.53
0.9
70.2
34.9
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
55.8
0.18
1.7
68.19
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022237
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032314
60489980 - 60498267
8288