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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60495455_60496648_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60495455 - 60496648
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGGTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATAAACT
Flanking Amino Acid:
VTAQDNTENKRPKTGFQMWL
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
82.6
33.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
73.1
0.52
1
69.2
46.1
Minor 5ss
21.7
-3.3
3.8
30.8
43.1
Minor BPS
60.6
0.41
2
79.5
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022237
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032314
60489980 - 60498267
8288