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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60510602_60520903_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60510602 - 60520903
Intron Length:
10302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGAGCC
5'SS Class:
major
3'SS Sequence:
TGTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AAATGTTTAATT
Flanking Amino Acid:
FTKGYQETISDVLNDAIFDE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
60.1
40.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
30.8
-2.2
3.6
43
44.2
Minor BPS
59.5
0.38
1.7
72.19
39

Associated Gene:

Gene:
GCH1
Ensembl Gene ID:
ENSAPLG00000005356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005554
60510000 - 60528090
18091