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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60521014_60523276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60521014 - 60523276
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTTCTGCTAATG
Flanking Amino Acid:
EHHLVPFVGKVHIGYLPNKQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
67.3
0.39
0.9
60.8
35.2
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
43.8
-0.6
2.3
53.82
41.3

Associated Gene:

Gene:
GCH1
Ensembl Gene ID:
ENSAPLG00000005356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005554
60510000 - 60528090
18091