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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60526314_60527320_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60526314 - 60527320
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
GTTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGGTTCTGAACT
Flanking Amino Acid:
IVEIYSRRLQVQERLTKQIA
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
84.5
0.78
0.8
81.3
30.7
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
69.8
0.7
1.4
81.42
39.9

Associated Gene:

Gene:
GCH1
Ensembl Gene ID:
ENSAPLG00000005356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005554
60510000 - 60528090
18091