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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60527406_60527963_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60527406 - 60527963
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TCGTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GATTTATTGACG
Flanking Amino Acid:
PAGVGVVIEATHMCMVMRGV
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
73.2
39.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.5
0.69
0.8
73.5
37.1
Minor 5ss
41.9
-0.9
2.8
51.9
38.5
Minor BPS
55.6
0.03
1.7
61.19
40.4

Associated Gene:

Gene:
GCH1
Ensembl Gene ID:
ENSAPLG00000005356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005554
60510000 - 60528090
18091