About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60540897_60542841_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60540897 - 60542841
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACCCTTTTAATT
Flanking Amino Acid:
CLSMTEHALSDGVDRTSTI*
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
39.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.8
80.9
31.1
Minor 5ss
37.1
-1.5
3
51
45.2
Minor BPS
59.7
0.38
1.2
66.47
39.2

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005332
60540585 - 60614224
73640