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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60542209_60542841_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60542209 - 60542841
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CCCGAATTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
CCCTCCCGAATT
Flanking Amino Acid:
CLSMTEHALSARALKVADGR
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
39.7
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
63.8
0.31
0.9
53.2
40.3
Minor 5ss
37.1
-1.5
3
51
45.2
Minor BPS
49.3
0.03
1.9
65.02
45.7

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034949
60540585 - 60614224
73640
ENSAPLT00000026837
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000043538
60540585 - 60614224
73640