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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60542926_60543821_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60542926 - 60543821
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
CATCCCCTGACC
Flanking Amino Acid:
PQTMLMFQQPEFQVPVTEPD
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
83.1
0.75
0.8
77.8
31
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
55.6
0.16
1.7
65.42
39.9

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034949
60540585 - 60614224
73640
ENSAPLT00000026837
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000005332
60540585 - 60614224
73640
ENSAPLT00000043538
60540585 - 60614224
73640