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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60547025_60547851_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60547025 - 60547851
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
GCCCTGTTACCA
Flanking Amino Acid:
PGQFTRVMGKVCTQLLVSRP
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
95.3
1.02
0.5
91.7
19.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.2
-0.6
2.2
48.25
42.5

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026837
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000005332
60540585 - 60614224
73640
ENSAPLT00000043538
60540585 - 60614224
73640
ENSAPLT00000034949
60540585 - 60614224
73640