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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60548147_60550502_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60548147 - 60550502
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTCTCTTGAATC
Flanking Amino Acid:
ALTECQLEAQDILEGGNLRV
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
69.5
0.44
0.9
62.4
38.5
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
61.9
0.35
1.4
66.43
40.1

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026837
60540585 - 60614224
73640