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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60549813_60550502_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60549813 - 60550502
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCTCGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GAAGTGTTAATG
Flanking Amino Acid:
ALTECQLEAQNVTKGARHKI
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.7
0.56
0.9
68.8
37.1
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
44.5
-0.5
2.1
45.34
41.3

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034949
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000005332
60540585 - 60614224
73640
ENSAPLT00000043538
60540585 - 60614224
73640