About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60550613_60554555_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60550613 - 60554555
Intron Length:
3943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GAAACTAAAAGG
Flanking Amino Acid:
TFQEEGSGMKDVPAWLKSLR
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
72.5
0.51
1
65.3
41.1
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
37.1
-1.1
2
35.83
38.9

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026837
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000005332
60540585 - 60614224
73640
ENSAPLT00000043538
60540585 - 60614224
73640