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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60559377_60567270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60559377 - 60567270
Intron Length:
7894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACGT
Flanking Amino Acid:
INTIGTSTSTRCHTSQADLR
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.8
77.2
37.1
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
49.1
0.01
2.1
73.68
43.1

Associated Gene:

Gene:
SAMD4A
Ensembl Gene ID:
ENSAPLG00000005142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026837
60540585 - 60614224
73640
ENSAPLT00000026147
60540585 - 60614224
73640
ENSAPLT00000005332
60540585 - 60614224
73640