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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60632877_60634157_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60632877 - 60634157
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAATCCTTATTT
Flanking Amino Acid:
ISHPDTASVTKGVTLTPDCL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.3
66.4
45.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.5
0.51
1.1
75.6
31.9
Minor 5ss
32.3
-2
2.6
34.7
34.5
Minor BPS
66.2
0.59
1.6
76.78
39.6

Associated Gene:

Gene:
CGRRF1
Ensembl Gene ID:
ENSAPLG00000005044
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005213
60627239 - 60634297
7059