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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60652563_60655011_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
60652563 - 60655011
Intron Length:
2449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CAATTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACGTGACA
Flanking Amino Acid:
KLVQTAELTKVFEIRNTEDL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
70.8
0.47
1
69.7
41
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
54.1
0.12
2.2
73.81
37.6

Associated Gene:

Gene:
GMFB
Ensembl Gene ID:
ENSAPLG00000023672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032469
60646657 - 60656946
10290