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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60652563_60663111_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
60652563 - 60663111
Intron Length:
10549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
GTTATCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTCGTTATCA
Flanking Amino Acid:
KLVQTAELTKGRKFAQEGKL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.3
0.37
1
60.1
40.3
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
53.4
0.1
2.3
70.59
41.5

Associated Gene:

Gene:
GMFB
Ensembl Gene ID:
ENSAPLG00000023672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005189
60646657 - 60663234
16578