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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60666570_60666652_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60666570 - 60666652
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCCCTCTGACC
Flanking Amino Acid:
AALIFFAIWHIIAFDELKTD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
40.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
28.9
-2.4
3
31.8
35.2
Minor BPS
46.7
-0.2
1.7
51.31
40.3

Associated Gene:

Gene:
CNIH1
Ensembl Gene ID:
ENSAPLG00000004994
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005146
60666489 - 60672009
5521