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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60666722_60669686_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60666722 - 60669686
Intron Length:
2965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AAATGTCTAACT
Flanking Amino Acid:
PIDQCNTLNPLVLPEYLIHA
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
49.1
0.01
2
69.29
41.3

Associated Gene:

Gene:
CNIH1
Ensembl Gene ID:
ENSAPLG00000004994
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005146
60666489 - 60672009
5521