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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60670877_60671381_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60670877 - 60671381
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
YLLSFFYYLYGMIYVLVSS*
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
CNIH1
Ensembl Gene ID:
ENSAPLG00000004994
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005146
60666489 - 60672009
5521