About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60840165_60840630_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
60840165 - 60840630
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTCCTG
5'SS Class:
major
3'SS Sequence:
ATTTCTCGCCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTCTTTCTATTT
Flanking Amino Acid:
SMLYLDEYDKVPWIPLCWGC
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
52.5
46
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
51.5
0.04
1.7
58.5
42.5
Minor 5ss
34.7
-1.7
3.4
46.8
48.6
Minor BPS
46.7
-0.1
1.8
64.22
41.1

Associated Gene:

Gene:
BMP4
Ensembl Gene ID:
ENSAPLG00000028313
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023493
60837452 - 60840693
3242