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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60878212_60925094_F

Intron Information:

Intron Rank:
131717
Intron Class:
major
Intron Phase:
Intron Coordinates:
60878212 - 60925094
Intron Length:
46883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TTGCCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTATTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81
33.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
81.6
0.71
0.8
73.1
37.2
Minor 5ss
40
-1.1
3
50.9
40
Minor BPS
60.4
0.4
2
83.78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020712
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035565
60877900 - 60926493
48594