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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6100764_6124026_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6100764 - 6124026
Intron Length:
23263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTAGTGA
5'SS Class:
weak_major
3'SS Sequence:
TGCTTCCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAA
U12 Branch Point Sequence:
AATAGTTTAAGT
Flanking Amino Acid:
AWSILIREAQIKAKNYDKVE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
53.8
39.7
Major BPS
60.6
0.26
1.1
67.5
35.1
Major PPT
75.8
0.58
0.8
70.4
30.7
Minor 5ss
37.9
-1.4
3.1
47.9
47.7
Minor BPS
48.8
-0
2
67.99
42.9

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860