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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61057913_61064556_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61057913 - 61064556
Intron Length:
6644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGTTTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
86.4
26.7
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
57.5
0.31
1.6
71.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003177
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003245
61057739 - 61104742
47004