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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61064659_61069698_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61064659 - 61069698
Intron Length:
5040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTAAATTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.5
0.8
0.8
80.7
31.4
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
50.4
0.09
1.9
72.71
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003177
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003245
61057739 - 61104742
47004