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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61094795_61096930_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61094795 - 61096930
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
CCTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTCCTTATTT
Flanking Amino Acid:
LLEELYITKQRLREIEERLQ
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
62.7
43.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.4
0.68
0.8
72.8
37.1
Minor 5ss
33
-1.9
3.4
48.3
47.3
Minor BPS
70.2
0.71
1.6
82.08
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003177
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003245
61057739 - 61104742
47004