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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61101721_61103013_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61101721 - 61103013
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
LNIFHPTDPVAYRLEPLILK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.8
0.76
0.8
77.9
35.8
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003177
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003245
61057739 - 61104742
47004