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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61154617_61154803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61154617 - 61154803
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGACAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TTGTTGACAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
65.6
0.35
1
57.6
41.8
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
44.2
-0.3
2.3
68.37
43.1

Associated Gene:

Gene:
FERMT2
Ensembl Gene ID:
ENSAPLG00000002657
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002740
61153887 - 61165593
11707