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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61155206_61155974_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61155206 - 61155974
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
CCTTTGTTCACG
Flanking Amino Acid:
EEMMMFAALQYHINKLSIMS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
80.6
0.69
0.8
76.8
31.9
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
45.2
-0.5
2.5
53.66
47.7

Associated Gene:

Gene:
FERMT2
Ensembl Gene ID:
ENSAPLG00000002657
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002740
61153887 - 61165593
11707