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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61156110_61157967_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61156110 - 61157967
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTATTT
Flanking Amino Acid:
LEGGKTSTILGDITSIPELA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
58.4
0.34
1.5
71.47
40.5

Associated Gene:

Gene:
FERMT2
Ensembl Gene ID:
ENSAPLG00000002657
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002740
61153887 - 61165593
11707