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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61159383_61160572_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61159383 - 61160572
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ACACGTTGAACA
Flanking Amino Acid:
GTPAHQMNLRGCEVTPDVNI
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.9
0.63
0.8
72
32.6
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
46
-0.3
1.8
52.86
39.1

Associated Gene:

Gene:
FERMT2
Ensembl Gene ID:
ENSAPLG00000002657
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002740
61153887 - 61165593
11707